PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g71330.1.p
Common NameBRADI_1g71330, LOC100834136
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 526aa    MW: 55304.6 Da    PI: 8.9115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g71330.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-055981123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C++C+k F r  nL+ H r H
  Bradi1g71330.1.p 59 FVCEICNKGFQRDQNLQLHRRGH 81
                      89*******************88 PP

2zf-C2H213.40.00024135157123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k +  +s+ k H +t+
  Bradi1g71330.1.p 135 WKCDKCSKKYAVQSDWKAHAKTC 157
                       58******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.32E-75881No hitNo description
SMARTSM003550.0175981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9495981IPR007087Zinc finger, C2H2
PfamPF121718.4E-55981IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355260100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.32E-7130155No hitNo description
SMARTSM00355150135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MEAETSSATA ERGVSASGAA LLPPPAPPAK KKRALPGMPD PDAEVIALSP KTLMATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SGKEVRKRVY VCPEPSCVHH DRSRALGDLT  120
GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHAKTCGSR EYRCDCGTLF SRRDSFITHR  180
AFCDALAEES AKARVPAAAE EGSSAAAAAP PPVPATPVPL QQLPPAPAQP APQPQPQHDE  240
QEREFSAAPE PVQFTPPMPS PPSVTGANVS ASTSSVSATS QSLLGSIFAP SPVAQAPLQY  300
QERAQAAVVA KPPSLCLTTD ASSSLFSAPL ADRPPPPSPS PSPHMSATAL LQKAAQMGAT  360
SSSSSYLRGL GLDISSSSPA STSSGQQHNQ HQHQQQEATM HVSFPEGSLP QWPPRLEPEP  420
APMMSAGLGL GLPYELTGGP VGNPELMMGH QSSLFSAKPA TLDFLGLGMS PTGPSASRGL  480
SVFMQPMGGA IGMAGSGAGA AETYGASRGA QAKPWERNPS SSPIL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759900.0AK375990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111P12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229031.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-140IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLI1H8K20.0I1H8K2_BRADI; Uncharacterized protein
STRINGBRADI1G71330.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.12e-97C2H2-like zinc finger protein